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SRX6455320: Other Sequencing of Enterobacter sp. E53
1 ILLUMINA (Illumina HiSeq 2000) run: 1.3M spots, 404.5M bases, 186.8Mb downloads

External Id: MMMOSRA:b9a9ea16-8238-4fe6-9aff-bc5ca8fa6f8f
Submitted by: Modernising Medical Microbiology, NDM, Oxford University (ModMedMicOxford)
Study: Genomic Dynamics of Species and Mobile Genetic Elements in a Prolonged blaIMP-4-associated Carbapenemase Outbreak in an Australian Hospital
show Abstracthide Abstract
Genome sequencing (Illumina, MinION) was used to investigate a 10-year (2006-2015) outbreak of blaIMP-4-containing organisms in a burns unit (BU) in a hospital in Sydney, Australia. 154 carbapenem non-susceptible, ESBL-producing or multi-drug resistant (MDR) isolates (58 clinical, 96 environmental) were analysed, of which 113 contained blaIMP-4. This study illustrates the persistence, diversity and evolution of genetic backgrounds disseminating blaIMP-4 amongst both human and environmental reservoirs during a prolonged outbreak.
Sample: Illumina short read sequencing for investigation of an IMP-4 carbapenemase outbreak
SAMN12289308 • SRS5112804 • All experiments • All runs
Library:
Name: N/A
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol: Genomic dna from single colony pick
Runs: 1 run, 1.3M spots, 404.5M bases, 186.8Mb
Run# of Spots# of BasesSizePublished
SRR96968801,339,847404.5M186.8Mb2019-07-18

ID:
8551838

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