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SRX20173849: Meliphaga UCEs
1 ILLUMINA (Illumina HiSeq 3000) run: 3.7M spots, 1.1G bases, 487.5Mb downloads

Design: Followed Faircloth et al. 2012 Syst Biol protocols (http://protocols.faircloth-lab.org/en/latest/)
Submitted by: University of New Mexico
Study: RUltraconserved elements put the final nail in the coffin of traditional use of the genus Meliphaga (Aves: Meliphagidae)
show Abstracthide Abstract
Molecular systematics is bringing taxonomy into the 21st Century by updating our nomenclature to reflect phylogenetic relationships of taxa. This transformation is highly evidenced by massive changes in avian taxonomy, ranging from ordinal to subspecies changes. In this study, we employ target capture of ultraconserved elements to resolve genus-level systematics of a problematic group of honeyeaters (Aves: Meliphagidae). With near complete species-level taxon sampling of the Australo-Papuan species within the traditionally recognized Meliphaga and Oreornis, we investigate generic-limits using a genomic dataset. Likelihood and species tree methods confirm two clades within this group and found the New Guinea endemic Oreornis chrysogenys embedded within one of these clades. Our study supports earlier recommendations that Meliphaga Lewin, 1808 should be restricted to three species, M. aruensis, M. lewinii, and M. notata. We make a case for recognizing three genera in the remaining species, Oreornis van Oort, 1910, Microptilotis Mathews, 1912, and Territornis Mathews, 1924.
Sample:
SAMN10715975 • SRS17492345 • All experiments • All runs
Library:
Name: Meliphaga_gracilis_ANWC_B57472
Instrument: Illumina HiSeq 3000
Strategy: Targeted-Capture
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Runs: 1 run, 3.7M spots, 1.1G bases, 487.5Mb
Run# of Spots# of BasesSizePublished
SRR243855943,668,7321.1G487.5Mb2023-05-01

ID:
27591011

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