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SRX6990645: CAP
1 ILLUMINA (Illumina HiSeq 2500) run: 49.7M spots, 14.9G bases, 6.1Gb downloads

Design: For Illumina sequencing, 2 g of purified pooled total RNA from three replicates was used for the preparation of strand-specific RNAseq libraries with 14 cycles of final amplification (Zhong et al 2012). The purified libraries were multiplexed and sequenced with 101 bp paired-end read length in two-lanes on an Illumina HiSeq2500 instrument (Illumina, San Diego, CA) at the Cornell University Biotech Facility (Ithaca, NY).
Submitted by: Boyce Thompson Institute
Study: Rapid and independent evolution of ancestral and novel chemical defenses in a genus of toxic plants (Erysimum, Brassicaceae)
show Abstracthide Abstract
Phytochemical diversity is shaped by coevolutionary cycles as specialization in herbivores imposes diversifying selection on plant chemical defenses. Plants in the speciose genus Erysimum (Brassicaceae) produce both ancestral glucosinolates and evolutionarily novel cardenolides as potent defenses. Here we test macroevolutionary hypotheses about the interplay of these potentially redundant defenses across the genus. We sequenced and assembled the genome of E. cheiranthoides and foliar transcriptomes of 47 additional Erysimum species to construct a highly resolved phylogeny, which showed that cardenolide diversity arose rapidly rather than gradually. Erysimum leaves contained both glucosinolates and cardenolides, with their concentrations, inducibility, and compound diversity varying independently. Furthermore, closely related species shared similar chemotypes for cardenolides, but not glucosinolates, suggesting that selection on these defenses acts at different scales. Ancestral and novel defenses in Erysimum thus appear to have evolved independently in response to different environments, and likely contributed to the evolutionary success of this widespread genus.
Sample: CAP
SAMN13000034 • SRS5512654 • All experiments • All runs
Library:
Name: CAP-1
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 49.7M spots, 14.9G bases, 6.1Gb
Run# of Spots# of BasesSizePublished
SRR1027739349,749,28214.9G6.1Gb2019-12-31

ID:
9193089

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