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SRX9105046: HS0082_raw_reads
1 ILLUMINA (Illumina MiSeq) run: 3.8M spots, 1.7G bases, 901Mb downloads

Design: Sonicated, whole genome sequencing library
Submitted by: National University of Singapore
Study: Mitogenomes reveal alternative initiation codons and lineage-specific gene order conservation in echinoderms
show Abstracthide Abstract
The mitochondrial genetic code is much more varied than the standard genetic code. The invertebrate mitochondrial code, for instance, comprises six initiation codons, including five alternative start codons. However, only two initiation codons are known in the echinoderm and flatworm mitochondrial code, the canonical ATG and alternative GTG. Here, we analysed 23 Asteroidea mitogenomes, including 10 newly-sequenced species, and unambiguously identified at least two other start codons, ATT and ATC, both of which also initiate translation of mitochondrial genes in other invertebrates. These findings underscore the diversity of the genetic code and expand upon the suite of initiation codons among echinoderms to avoid erroneous annotations. Our analyses have also uncovered the remarkable conservation of gene order among asteroids, echinoids and holothuroids, with only an interchange between two gene positions in asteroids over approximately 500 million years of echinoderm evolution.
Sample: HS0082_raw_reads
SAMN15965770 • SRS7348616 • All experiments • All runs
Library:
Name: HS0082
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 3.8M spots, 1.7G bases, 901Mb
Run# of Spots# of BasesSizePublished
SRR126223083,768,6661.7G901Mb2020-10-12

ID:
11832307

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