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SRX2803997: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 997,509 spots, 379.2M bases, 230.2Mb downloads

External Id: EXT00259611
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: Foodborne Pathgen Survey
PRJNA175287 • SRP106958 • All experiments • All runs
show Abstracthide Abstract
Genome sequencing project.
Sample: Pathogen bacterial, environmental sample from Salmonella enterica subsp. enterica serovar Newport str. CFSAN001644
SAMN01816381 • SRS2184235 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Newport str. CFSAN001644
Library:
Name: Salmonella enterica subsp. enterica Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 997,509 spots, 379.2M bases, 230.2Mb
Run# of Spots# of BasesSizePublished
SRR5534402997,509379.2M230.2Mb2017-05-12

ID:
4038725

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