Sequence capture of Australian Asteraceae - SRA

SRX22983667: Sequence capture of Australian Asteraceae
1 ILLUMINA (Illumina NovaSeq 6000) run: 3.3M spots, 936.2M bases, 302.8Mb downloads

Design: Libraries were prepared from sonicated genomic DNA using the QIAseq Ultralow Input DNA Library UDI-A Kit (96) adjusted for use on the Echo Acoustic Liquid Handler. Libraries were captured using a myBaits Angiosperms 353 kit following manufacturer's instructions.

Submitted by: CSIRO

Study: Target sequence capture for phylogenomics guided host test list selection in biological control: a case study in flaxleaf fleabane (Erigeron bonariensis; Astereae)

PRJNA1053798 • SRP479242 • All experiments • All runs

show Abstracthide Abstract

We demonstrate the utility of target sequence capture data (Angiosperms353) for the biological control of flaxleaf fleabane (Erigeron bonariensis) which is a major cropping weed in Australia. Phylogenomic analysis was conducted on 280 species of the tribe Astereae (family Asteraceae) occurring in Australia and New Zealand, clarifying relationships between the target species and related clades of native and non-native Astereae.

Sample: Captured with myBaits Angiosperms 353 kit: Standard plant (TruSeq 8 bp blockers, 24 hr hybridisation at 65degC)

SAMN38871987 • SRS19949274 • All experiments • All runs

Organism: Vittadinia eremaea

Library:

Name: Vittadinia_eremaea_AG261_16rxn_133308_bbduk

Instrument: Illumina NovaSeq 6000

Strategy: Targeted-Capture

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Runs: 1 run, 3.3M spots, 936.2M bases, 302.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR27306228	3,349,072	936.2M	302.8Mb	2024-04-30

ID:: 31053340

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