16S rRNA gene metabarcoding of Archaea from Hypogenic Cave: clay sam... - SRA

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SRX8375558: 16S rRNA gene metabarcoding of Archaea from Hypogenic Cave: clay samples
1 ILLUMINA (Illumina MiSeq) run: 77,128 spots, 46.1M bases, 27.5Mb downloads

Design: For library preparation, a fragment of the archaeal 16S rRNA regionof around 480 bp was amplied using the primers SSU1ArF (5' TCCGGT TGA TCC YGC BRG 3') and SSU520R (5' GCT ACG RRY GYTTTA RRC 3')

Submitted by: CSIC Consejo Superior de Investigaciones Cientificas

Study: Monitoring and physical-chemical characterization of effect GreenHouse Gases in Hypogenic Underground environments (CGL2016-78318-C2-2-R)

PRJNA633997 • SRP262597 • All experiments • All runs

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This project focused on exploring the microbial communities of hypogenic cavities generated by rising waters and related to tectonic and hydrothermal activity. Its aim is to define for the first time the environmental conditions of this type of caves and characterize the microbial agents and mechanisms responsible for consumption and emissions of GHGs in the shallow vadose zone.

Sample:

SAMN14979322 • SRS6690330 • All experiments • All runs

Organism: cave metagenome

Library:

Name: SM30A

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 77,128 spots, 46.1M bases, 27.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR11825017	77,128	46.1M	27.5Mb	2020-08-19

ID:: 10892758

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