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  • The following term was not found in SRA: pain-producing.

ERX4781288: Illumina MiSeq sequencing; qiita_ptid_9911:10317.000115484
1 ILLUMINA (Illumina MiSeq) run: 12,660 spots, 1.9M bases, 1.2Mb downloads

Design: fecal, saliva, skin and environment samples from the American Gut Project
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: American Gut Project
show Abstracthide Abstract
The American Gut project is the largest crowdsourced citizen science project to date. Fecal, oral, skin, and other body site samples collected from thousands of participants represent the largest human microbiome cohort in existence. Detailed health and lifestyle and diet data associated with each sample is enabling us to deeply examine associations between the human microbiome and factors such as diet (from vegan to near carnivore and everything in between), season, amount of sleep, and disease states such as IBD, diabetes, or autism spectrum disorder-as well as many other factors not listed here. The American Gut project also encompasses the British Gut and Australian Gut projects, widening the cohort beyond North America. As the project continues to grow, we will be able to identify significant associations that would not be possible with smaller, geographically and health/disease status-limited cohorts.
Sample: 10317.000115484
SAMEA7686197 • ERS5442729 • All experiments • All runs
Library:
Name: 10317.000115484
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4
Experiment attributes: (show all 26 attributes...) (hide...)
barcode: GCCGCCAGGGTC
center_name: UCSDMI
center_project_name: AG87
extraction_robot: Carmen_HOWE_KF_4
extractionkit_lot: 163051748
linker: GT
mastermix_lot: 678071
orig_name: 115484
pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
plating: SF
primer: GTGTGYCAGCMGCCGCGGTAA
primer_date: 62320
primer_plate: 3
processing_robot: Echo550
project_name: American Gut Project
run_center: UCSDMI
run_date: 11/6/20
run_prefix: AGP_289_290_306_STAK_CMI_with_Rodolfo_192samples_S (show full text...)(hide...)
AGP_289_290_306_STAK_CMI_with_Rodolfo_192samples_S1_L001
runid: 201106_M05314_0267_000000000-JCNCM
sample_plate: American_Gut_Project_Plate_306
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
tm1000_8_tool: 108379Z
well_description: American_Gut_Project_Plate_306_115484_H5
well_id: H5
Runs: 1 run, 12,660 spots, 1.9M bases, 1.2Mb
Run# of Spots# of BasesSizePublished
ERR491452612,6601.9M1.2Mb2020-12-06

ID:
12600328

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