GSM2534113: ChIP-seq from liver (ENCLB802SIR); Homo sapiens; ChIP-Seq - SRA

SRX2635980: GSM2534113: ChIP-seq from liver (ENCLB802SIR); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 44M spots, 2.2G bases, 944.4Mb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS046RNA: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

SAMN04284275 • SRS1313277 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf

Experiment attributes:

GEO Accession: GSM2534113

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 44M spots, 2.2G bases, 944.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR5338867	44,010,907	2.2G	944.4Mb	2017-03-13

ID:: 3814052

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