GSM2400324: DNase-seq from A673 (ENCLB729MKU); Homo sapiens; DNase-Hy... - SRA

SRX2370636: GSM2400324: DNase-seq from A673 (ENCLB729MKU); Homo sapiens; DNase-Hypersensitivity
3 ILLUMINA (Illumina HiSeq 2000) runs: 294.1M spots, 21.2G bases, 10.6Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS790NPQ

SAMN06044664 • SRS1816085 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: DNase-Hypersensitivity

Source: GENOMIC

Selection: DNase

Layout: PAIRED

Construction protocol: other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Experiment attributes:

GEO Accession: GSM2400324

Links:

NCBI link: NCBI Entrez (gds)

Runs: 3 runs, 294.1M spots, 21.2G bases, 10.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR5048395	13,744,875	989.6M	665.7Mb	2016-12-09
SRR5048396	117,172,283	8.4G	2.9Gb	2016-12-09
SRR5048397	163,165,637	11.7G	7Gb	2016-12-09

ID:: 3454310

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