Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX1097020: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Athinai str. FDA00000736 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 578.6M bases, 365.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02844121 • SRS992306 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Athinai

Library:

Name: Salmonella enterica str. FDA00000736 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Athinai str. FDA00000736.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 1.2M spots, 578.6M bases, 365.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR2102416	1,152,616	578.6M	365.2Mb	2015-07-14

ID:: 1602659

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