Shotgun sequencing of water sample from a Patagonian fjord (marine me... - SRA

SRX10857580: Shotgun sequencing of water sample from a Patagonian fjord (marine metagenome): 5 meters deep
1 ILLUMINA (Illumina HiSeq 3000) run: 20.8M spots, 4.2G bases, 1.5Gb downloads

Design: We filtered 20-25L of 5-meter deep marine sample from Comau fjord through a 0.22 micron Sterivex to capture bacterial cells. Then, we extracted DNA from the 0.22 um filter through phenol-chloroform DNA extraction methodology, using Xanthogenate buffer for lysis step. Sequencing library were prepared using Illumina TruSeq DNA PCR-Free kit, following its sample preparation guide.

Submitted by: Universidad Andres Bello

Study: Microbial Ecology of the Comau Fjord, Northern Patagonia (42 S)

PRJNA729490 • SRP319507 • All experiments • All runs

show Abstracthide Abstract

This project seeks to understand how microbial communities respond to anthropogenic disturbances and how this could provide insights into microbial ecology and evolution. We also seek to understand and quantify the impact and reach of human activities and its consequences on environmental and human health.

Sample:

SAMN19118269 • SRS8953074 • All experiments • All runs

Organism: marine metagenome

Library:

Name: EC-BacI

Instrument: Illumina HiSeq 3000

Strategy: WGS

Source: METAGENOMIC

Selection: size fractionation

Layout: PAIRED

Runs: 1 run, 20.8M spots, 4.2G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR14511927	20,763,960	4.2G	1.5Gb	2021-05-14

ID:: 14440688

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity