Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX973554: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Yoruba str. FDA00001771 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1M spots, 356.6M bases, 178.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02845155 • SRS888805 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica

Library:

Name: Salmonella enterica str. FDA00001771 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Yoruba str. FDA00001771.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 1M spots, 356.6M bases, 178.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR1946936	1,047,314	356.6M	178.4Mb	2015-03-30

ID:: 1415524

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