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SRX10493066: Random DNA sequencing of human salivary metagenome in periodontitis
1 ILLUMINA (Illumina HiSeq 4000) run: 3.4M spots, 1G bases, 393.8Mb downloads

Design: Oral metagenomic DNA was obtained from non-stimulated saliva, using a broad Gram-positive/negative DNA extraction protocol, quality controlled, and submitted to enzymatic tagging and fragmentation according to the Illumina Nextera libray preparation kit . Sequencing was performed in a paired-end fashion with 150 bp read sizes. Host-related reads were filtered out via Bowtie2 software.
Submitted by: Amazonas State University
Study: Human salivary metagenome in health and disease
show Abstracthide Abstract
This study aimed to characterize the oral metagenome of healthy and periodontitis human subjects. Overall, 27 non-stimulated saliva samples were collected (13 from healthy individuals and 14 from periodontitis).
Sample: Periodontitis saliva sample 0019
SAMN18514999 • SRS8618154 • All experiments • All runs
Name: OPS0019 Hiseq paired
Instrument: Illumina HiSeq 4000
Strategy: WGS
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 3.4M spots, 1G bases, 393.8Mb
Run# of Spots# of BasesSizePublished


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