Random DNA sequencing of human salivary metagenome in oral health - SRA

SRX10493060: Random DNA sequencing of human salivary metagenome in oral health
1 ILLUMINA (Illumina HiSeq 4000) run: 4.1M spots, 1.2G bases, 465.2Mb downloads

Design: Oral metagenomic DNA was obtained from non-stimulated saliva, using a broad Gram-positive/negative DNA extraction protocol, quality controlled, and submitted to enzymatic tagging and fragmentation according to the Illumina Nextera libray preparation kit . Sequencing was performed in a paired-end fashion with 150 bp read sizes. Host-related reads were filtered out via Bowtie2 software.

Submitted by: Amazonas State University

Study: Human salivary metagenome in health and disease

PRJNA717815 • SRP312981 • All experiments • All runs

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This study aimed to characterize the oral metagenome of healthy and periodontitis human subjects. Overall, 27 non-stimulated saliva samples were collected (13 from healthy individuals and 14 from periodontitis).

Sample: Oral health saliva sample 0013

SAMN18514993 • SRS8618147 • All experiments • All runs

Organism: human oral metagenome

Library:

Name: OHS0013 Hiseq paired

Instrument: Illumina HiSeq 4000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 4.1M spots, 1.2G bases, 465.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR14122746	4,107,008	1.2G	465.2Mb	2022-03-18

ID:: 13925064

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