Random DNA sequencing of human salivary metagenome in oral health - SRA

SRX10493057: Random DNA sequencing of human salivary metagenome in oral health
1 ILLUMINA (Illumina HiSeq 4000) run: 4.2M spots, 1.2G bases, 490.5Mb downloads

Design: Oral metagenomic DNA was obtained from non-stimulated saliva, using a broad Gram-positive/negative DNA extraction protocol, quality controlled, and submitted to enzymatic tagging and fragmentation according to the Illumina Nextera libray preparation kit . Sequencing was performed in a paired-end fashion with 150 bp read sizes. Host-related reads were filtered out via Bowtie2 software.

Submitted by: Amazonas State University

Study: Human salivary metagenome in health and disease

PRJNA717815 • SRP312981 • All experiments • All runs

show Abstracthide Abstract

This study aimed to characterize the oral metagenome of healthy and periodontitis human subjects. Overall, 27 non-stimulated saliva samples were collected (13 from healthy individuals and 14 from periodontitis).

Sample: Oral health saliva sample 0002

SAMN18514982 • SRS8618145 • All experiments • All runs

Organism: human oral metagenome

Library:

Name: OHS0002 Hiseq paired

Instrument: Illumina HiSeq 4000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 4.2M spots, 1.2G bases, 490.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR14122749	4,153,480	1.2G	490.5Mb	2022-03-18

ID:: 13925061

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity