Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX868413: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Brunei str. FDA00003797 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 637,951 spots, 237.1M bases, 138.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02847217 • SRS839258 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica

Library:

Name: Salmonella enterica str. FDA00003797 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Brunei str. FDA00003797.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 637,951 spots, 237.1M bases, 138.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR1792727	637,951	237.1M	138.4Mb	2015-02-06

ID:: 1242432

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