Whole genome shotgun sequencing of Salmonella enterica str. IEH-NGS-S... - SRA

SRX857354: Whole genome shotgun sequencing of Salmonella enterica str. IEH-NGS-SAL-01864 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 542,259 spots, 211.6M bases, 111.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN03275305 • SRS829324 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. IEH-NGS-SAL-01864 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. IEH-NGS-SAL-01864.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 542,259 spots, 211.6M bases, 111.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1777708	542,259	211.6M	111.2Mb	2015-01-28

ID:: 1208772

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