Whole genome shotgun sequencing of Salmonella enterica str. IEH-NGS-S... - SRA

SRX819974: Whole genome shotgun sequencing of Salmonella enterica str. IEH-NGS-SAL-01685 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 2.2M spots, 985.4M bases, 567.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

show Abstracthide Abstract

Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN03199690 • SRS799854 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. IEH-NGS-SAL-01685 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. IEH-NGS-SAL-01685.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 2.2M spots, 985.4M bases, 567.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR1728730	2,237,262	985.4M	567.6Mb	2014-12-20

ID:: 1169667

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity