Whole genome shotgun sequencing of Salmonella enterica str. FDA000086... - SRA

SRX796231: Whole genome shotgun sequencing of Salmonella enterica str. FDA00008628 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 431,225 spots, 205.8M bases, 119.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN03223268 • SRS779688 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. FDA00008628 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. FDA00008628.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 431,225 spots, 205.8M bases, 119.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1693407	431,225	205.8M	119.2Mb	2014-12-04

ID:: 1139787

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