47C - SRA - NCBI

SRX9349095: 47C
1 OXFORD_NANOPORE (MinION) run: 76,167 spots, 1.2G bases, 280.1Mb downloads

Design: DNA was extracted using phenol:chloroform and ethanol precipitation . High molecular weight DNA (>20kb) was isolated using a Blue Pippin (Sage Science, Beverly, MA, USA) with a High Pass Plus Casette. Nanopore libraries were generated with the SQK-LSK109 1D Genomic Ligation kit (Oxford Nanopore, Oxford Science Park, UK). Reads were generated with a R9.4.1 flow cell using a 48-hour script. Reads were basecalled with guppy v2.3.1+1b9405b6.

Submitted by: Jet Propulsion Laboratory, California Institute of Technology

Study: Complete Genomes of Thermophiles Isolated from Yates Shaft, a Deep-Subsurface Environment

PRJNA662697 • SRP288269 • All experiments • All runs

show Abstracthide Abstract

The complete genomes of seven thermophiles that could grow at >55C, but not at 37C, were generated. These thermophilic bacteria will play a useful role as model microorganisms, and analyzing their genomes will help to understand the observed production of novel bioactive compounds, including thermozymes and macromolecules.

Sample:

SAMN06347031 • SRS7572026 • All experiments • All runs

Organism: Geobacillus sp. 47C-IIb

Library:

Name: 47C

Instrument: MinION

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 76,167 spots, 1.2G bases, 280.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR12883146	76,167	1.2G	280.1Mb	2020-10-23

ID:: 12208819

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