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SRX8787737: Metagenome of Gobi desert soil
1 ILLUMINA (NextSeq 500) run: 25.6M spots, 7.6G bases, 2.9Gb downloads

Design: Nextera DNA flex, 2 x 150 bp, 3 Gb requested depth. All four files are the same library: S29_R1 and S100_R1 concatenated for analysis, likewise for R2s.
Submitted by: Monash University
Study: Hydrogen-oxidising bacteria in hot desert soils
show Abstracthide Abstract
It is debated how the diverse bacterial communities inhabiting hot desert soils maintain energy and carbon needs. It has traditionally been thought that most bacteria persist by using organic carbon synthesised by photoautotrophs following transient hydration events. However, recent studies focused on Antarctic soils revealed some bacteria use atmospheric trace gases such as hydrogen (H2) to conserve energy and fix carbon independently of photosynthesis. In this work, we investigated whether atmospheric H2 oxidation occurs in hot desert soils and compared this process to photosynthesis. To do so, we profiled the distribution, expression and activities of hydrogenases and photosystems in topsoils collected from the South Australian desert over a simulated hydration-desiccation cycle. This BioProject contains the raw metagenomic and metatranscriptomic data analysed in this study.
Sample: Dry soil crust samples, with 60% stone coverage, no vegetation coverage
SAMN15596734 • SRS7056318 • All experiments • All runs
Organism: soil metagenome
Library:
Name: Gobi
Instrument: NextSeq 500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 25.6M spots, 7.6G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR1228440625,566,5487.6G2.9Gb2020-07-29

ID:
11423989

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