Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX694306: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica str. CFSAN008950 by Illumina HiSeq
1 ILLUMINA (Illumina HiSeq 2000) run: 2.6M spots, 519.5M bases, 343.5Mb downloads

Design: HiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

show Abstracthide Abstract

Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02900381 • SRS695819 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica

Library:

Name: Salmonella enterica str. CFSAN008950 shotgun

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: 100-bp library created for Salmonella enterica subsp. enterica str. CFSAN008950.

Spot descriptor:

1 forward101 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	unknown

Runs: 1 run, 2.6M spots, 519.5M bases, 343.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR1567363	2,571,597	519.5M	343.5Mb	2014-09-05

ID:: 978504

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity