Whole genome shotgun sequencing of Salmonella enterica str. CFSAN0088... - SRA

SRX694257: Whole genome shotgun sequencing of Salmonella enterica str. CFSAN008875 by Illumina HiSeq
1 ILLUMINA (Illumina HiSeq 2000) run: 2.8M spots, 563.7M bases, 360.6Mb downloads

Design: HiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02900306 • SRS695785 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. CFSAN008875 shotgun

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: 100-bp library created for Salmonella enterica str. CFSAN008875.

Spot descriptor:

1 forward101 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	unknown

Runs: 1 run, 2.8M spots, 563.7M bases, 360.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR1567317	2,790,400	563.7M	360.6Mb	2014-09-05

ID:: 978455

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Sequence Read Archive

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