Whole genome shotgun sequencing of Salmonella enterica str. IEH-NGS-S... - SRA

SRX684463: Whole genome shotgun sequencing of Salmonella enterica str. IEH-NGS-SAL-01112 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 478,623 spots, 224.6M bases, 127.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02952722 • SRS687587 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. IEH-NGS-SAL-01112 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. IEH-NGS-SAL-01112.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 478,623 spots, 224.6M bases, 127.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1555356	478,623	224.6M	127.2Mb	2014-08-21

ID:: 958292

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