Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX683175: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Oranienburg str. FDN0191 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.9M spots, 726.7M bases, 423.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

show Abstracthide Abstract

Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02678710 • SRS686571 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Oranienburg

Library:

Name: Salmonella enterica str. FDN0191 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Oranienburg str. FDN0191.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 1.9M spots, 726.7M bases, 423.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR1553828	1,862,708	726.7M	423.5Mb	2014-08-19

ID:: 956095

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity