Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX679145: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium var. O 5 - (Copenhagen) str. MOD1-Sal_927 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 900,787 spots, 424M bases, 217.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02645813 • SRS682316 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. MOD1-Sal_927 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium var. O 5 - (Copenhagen) str. MOD1-Sal_927.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 900,787 spots, 424M bases, 217.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR1548413	900,787	424M	217.7Mb	2014-08-12

ID:: 950273

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