Whole genome shotgun sequencing of Salmonella enterica str. FDA000000... - SRA

SRX641663: Whole genome shotgun sequencing of Salmonella enterica str. FDA00000023 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 499.8M bases, 309.9Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02800592 • SRS650608 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. FDA00000023 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. FDA00000023.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 1.2M spots, 499.8M bases, 309.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR1501676	1,171,910	499.8M	309.9Mb	2014-06-30

ID:: 897622

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