Whole genome shotgun sequencing of Salmonella enterica str. FSW0170 b... - SRA

SRX534182: Whole genome shotgun sequencing of Salmonella enterica str. FSW0170 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 503,771 spots, 240.6M bases, 155.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02678897 • SRS602908 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. FSW0170 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. FSW0170.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 503,771 spots, 240.6M bases, 155.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR1272769	503,771	240.6M	155.3Mb	2014-05-06

ID:: 738091

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