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SRX525356: Thermoanaerobaculum aquaticum Genome sequencing
1 ILLUMINA (Illumina MiSeq) run: 1.6M spots, 465M bases, 290.9Mb downloads

Submitted by: University of Oklahoma
Study: Thermoanaerobaculum aquaticum strain:MP-01 Genome sequencing and assembly
show Abstracthide Abstract
A novel bacterium was isolated from a freshwater hot spring, the Hale House Spring, located at Hot Springs National Park, Hot Springs, AR, USA. Cells of strain MP-01T stained Gram-negative, were rod-shaped, non-motile, strictly anaerobic and chemo-organotrophic and did not form spores. Growth occurred at 50–65 °C, with an optimum at 60 °C, at pH 6.0–8.0, with an optimum at pH 6.5–7.0, and at NaCl concentrations up to 0.5 % (w/v), with optimum growth in the absence of NaCl. Strain MP-01T was capable of fermentative growth on pyruvate or proteinaceous substrates as well as reducing Fe(III) and Mn(IV). Major fatty acids were iso-C15 : 0, iso-C16 : 0, anteiso-C17 : 0 and iso-C17 : 0. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine and the major isoprenoid quinone was MK-10. In the polyamine pattern, sym-homospermidine was the predominant compound. The DNA G+C content was 62.7 mol%. Analysis of the 16S rRNA gene sequence of the isolate indicated that strain MP-01T represents the first reported cultivated member of subdivision 23 of the Acidobacteria. It is proposed that strain MP-01T represents a novel genus and species, for which the name Thermoanaerobaculum aquaticum gen. nov., sp. nov. is proposed. The type strain of Thermoanaerobaculum aquaticum is MP-01T ( = DSM 24856T = JCM 18256T).
Sample:
SAMN02732492 • SRS597055 • All experiments • All runs
Library:
Name: MP01
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Spot descriptor:
forward151  reverse

Runs: 1 run, 1.6M spots, 465M bases, 290.9Mb
Run# of Spots# of BasesSizePublished
SRR12596801,550,149465M290.9Mb2014-04-24

ID:
725834

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