Whole genome shotgun sequencing of Salmonella enterica subsp. str. FS... - SRA

SRX506651: Whole genome shotgun sequencing of Salmonella enterica subsp. str. FSE0043 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 889,472 spots, 416M bases, 230.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN02345387 • SRS585734 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. FSE0043 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. str. FSE0043.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 889,472 spots, 416M bases, 230.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR1212375	889,472	416M	230.1Mb	2014-04-01

ID:: 705955

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