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SRX502899: PacBio Sequencing of PXO99A
4 PACBIO_SMRT (PacBio RS) runs: 653,928 spots, 2.8G bases, 10.5Gb downloads

Design: Sheared to 20kb fragments, size selected with BluePippin for 10kb+ fragments
Submitted by: (Cornell)
Study: Representative of race 6
show Abstracthide Abstract
<P><B><I>Xanthomonas oryzae</I> pv. <i>oryzae</i> PXO99A</B>. This strain is a representative strain of race 6 isolated in the Philippines. This plant pathogen affects rice plants by causing leaf blight, a major problem in Asian countries where rice production occurs on an industrial scale. This organism enters the xylem and spreads throughout the vascular tissue of the plant, which results in wilting of the plant, or to leaf blight if the infection occurs later in development. <I>Xanthomonas oryzae</I> pv. <i>oryzae</i> PXO99A will be used for comparative analysis with other plant pathogenic <I>Xanthomonas</I> species.
Library:
Instrument: PacBio RS
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Spot descriptor:
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Pipeline: show...hide...
ProgramVersion
PacBio RSII Instrument Software2000.122412
Runs: 4 runs, 653,928 spots, 2.8G bases, 10.5Gb
Run# of Spots# of BasesSizePublished
SRR1207355163,482839.3M3Gb2015-06-09
SRR1207356163,482730.4M2.7Gb2015-06-09
SRR1207358163,482669.7M2.5Gb2015-06-09
SRR1207360163,482603.3M2.3Gb2015-06-09

ID:
702149

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