WGS of Pseudomonas sp. s199 - SRA

SRX6827107: WGS of Pseudomonas sp. s199
1 ILLUMINA (NextSeq 500) run: 1.8M spots, 528.6M bases, 204.3Mb downloads

Design: WGS data of bacteria collected from hospital ICU surfaces and sequenced using a modified nextera protocol on an Illumina NextSeq Hioutput lane

Submitted by: Washington University in St. Louis School of Medicine

Study: Pakistan and United States ICU transmission dynamics

PRJNA497126 • SRP221243 • All experiments • All runs

show Abstracthide Abstract

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two countries.

Sample: This is a new species based on average nucleotide identity to known species.

SAMN10248985 • SRS5369404 • All experiments • All runs

Organism: Pseudomonas sp. s199

Library:

Name: Pseudomonas_199

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 1.8M spots, 528.6M bases, 204.3Mb