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SRX6808786: Pakistan Pantoea Collection VH_4
1 ILLUMINA (Illumina HiSeq 4000) run: 4.1M spots, 1.2G bases, 483.2Mb downloads

Design: GBS
Submitted by: Cook Lab - University of California at Davis
Study: Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop
show Abstracthide Abstract
Bacterial leaf blight (BLB) of cotton is an important bacterial disease occurring in all cotton producing countries of the world, including Pakistan. BLB can be one of the most destructive infections that cotton encounters in fields. Infected cotton samples were collected from five different districts of Punjab, Pakistan. Whole genome sequences (WGS) were generated for 43 isolates using Illumina HiSeq 4000. Different epiphytic Pantoea species were found to be associated with symptomatic leaves of cotton. The genome of Pantoea species have single circular chromosome ~4.8Mbp with average genomic GC content of 55.3%.
Sample: Pakistan Pantoea Collection VH_4
SAMN12692275 • SRS5352986 • All experiments • All runs
Library:
Name: VH_4.S80_L008
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: GENOMIC
Selection: Reduced Representation
Layout: PAIRED
Runs: 1 run, 4.1M spots, 1.2G bases, 483.2Mb
Run# of Spots# of BasesSizePublished
SRR100753464,104,0091.2G483.2Mb2019-09-05

ID:
8967386

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