Whole genome shotgun sequencing of Salmonella enterica subsp. str. FD... - SRA

SRX387794: Whole genome shotgun sequencing of Salmonella enterica subsp. str. FDN0067 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 910,711 spots, 314.6M bases, 172Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN02345418 • SRS511686 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. FDN0067 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. str. FDN0067.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 910,711 spots, 314.6M bases, 172Mb

Run	# of Spots	# of Bases	Size	Published
SRR1043944	910,711	314.6M	172Mb	2013-12-05

ID:: 557354

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