Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX386247: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Tennessee str. MOD1_SALC_70 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 2.4M spots, 834.6M bases, 545.9Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

show Abstracthide Abstract

Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN01907435 • SRS470518 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Tennessee

Library:

Name: Salmonella enterica str. MOD1_SALC_70 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Tennessee str. MOD1_SALC_70.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 2.4M spots, 834.6M bases, 545.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR1041888	2,428,585	834.6M	545.9Mb	2013-12-03

ID:: 555604

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity