Whole genome shotgun sequencing of Salmonella enterica str. IEH_NGS_S... - SRA

SRX332834: Whole genome shotgun sequencing of Salmonella enterica str. IEH_NGS_SAL_00252 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 331.4M bases, 206.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN02265339 • SRS468267 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. CFSAN005712_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumia Nextera XT library created for Salmonella enterica str. CFSAN005712_01.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	3.2.1

Runs: 1 run, 1.2M spots, 331.4M bases, 206.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR949355	1,164,959	331.4M	206.5Mb	2013-08-08

ID:: 467852

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