U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX5445793: Metagenomes of Leine river upstream wastewater treatment plant
1 ILLUMINA (Illumina HiSeq 2500) run: 14.7M spots, 4.8G bases, 2.1Gb downloads

Design: Libraries were created with Nextera DNA Sample Preparation Kit (96 Samples), indexed with Nextera Index Kit (96 indexes, 384 samples), sequencing was performed with HiSeq Rapid SBS Kit v2 (500 Cycle) and HiSeq Rapid PE Cluster Kit v2 on a HiSeq 2502
Submitted by: Genomic and Applied Microbiology & Goettingen Genomics Laboratory
Study: ANTIRES - Distribution pathways of antibiotic resistances in municipal wastewater
show Abstracthide Abstract
ANTIRES investigates the occurrence and expression of antibiotic resistance genes (ARG) and antibiotic resistant microorganisms (ARM) in wastewater using state-of-the-art complementary meta-omics techniques. In order to identify distribution pathways of ARGs through polluted wastewater, samples of municipal wastewater are taken at seasonal intervals. The integration of microbiological and biochemical as well as metagenome, metatranscriptome and metaproteome analyses should provide information about the occurrence of antibiotics, ARMs and actually expressed ARGs. The results of these investigations will be used to establish an antibiotic resistance rapid test. The data and diagnostic tools collected in ANTIRES contribute to a better understanding of the distribution pathways and seasonal dynamics of antibiotic resistance in water bodies and are therefore essential for the development of strategies to contain this process.
Sample: Leine downstream of Watewater treatment plant, Goettingen
SAMN10995911 • SRS4422854 • All experiments • All runs
Library:
Name: 1611Go_LeineEff
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 14.7M spots, 4.8G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR864801814,692,3354.8G2.1Gb2019-03-15

ID:
7362143

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...