CAVE Strain 375 genome - SRA

SRX5299850: CAVE Strain 375 genome
1 ILLUMINA (Illumina MiSeq) run: 8.7M spots, 2.6G bases, 1.2Gb downloads

Design: Genomic DNA was extracted with NZY Microbial gDNA (NZYTech, Portugal). Libraries were prepared using the Nextera XT library prep workflow (Illumina), and 2 150-nucleotide (nt) paired-end reads were generated on an Illumina MiSeq instrument. Quality trimming was executed using the sliding-window operation in TrimGalore (http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/) with default parameters. The final assembly was performed using the SPAdes (10) assembler (version 3.50) using kmers of 33, 55 and 77 nt. The assembly was subjected to binning with metabat and quality check was performed on the final resulting file with checkM.

Submitted by: Centre for Functional Diversity

Study: bacterium from Genome sequencing

PRJNA495731 • SRP179443 • All experiments • All runs

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This Bioproject encompasses the genomes of several bacterial strains that were isolated from stalactite dripping water collected in a pioneer study performed in Algar do Pena cave, a karst massif known as Maciço Calcário Estremenho, situated in the center of Portugal.

Sample:

SAMN10230472 • SRS4298806 • All experiments • All runs

Organism: Crenobacter cavernae

Library:

Name: CAVE-375

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 8.7M spots, 2.6G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR8495389	8,704,603	2.6G	1.2Gb	2019-01-31

ID:: 7173793

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