Draft WGS of strain 383 - SRA

SRX5250031: Draft WGS of strain 383
1 ILLUMINA (Illumina MiSeq) run: 5.2M spots, 1.6G bases, 665.6Mb downloads

Design: genomic DNA was extracted with NZY Microbial gDNA (NZYTech, Portugal). Libraries were prepared using the Nextera XT library prep workflow (Illumina), and 2 150-nucleotide (nt) paired-end reads were generated on an Illumina MiSeq instrument. Quality trimming was executed using the sliding-window operation in TrimGalore with default parameters. The final assembly was performed using the SPAdes assembler (version 3.50) using kmers of 33, 55 and 77 nt. The assembly was subjected to binning with metabat and quality check was performed on the final resulting file with checkM.

Submitted by: Centre for Functional Diversity

Study: bacterium from Genome sequencing

PRJNA495731 • SRP179443 • All experiments • All runs

show Abstracthide Abstract

This Bioproject encompasses the genomes of several bacterial strains that were isolated from stalactite dripping water collected in a pioneer study performed in Algar do Pena cave, a karst massif known as Maciço Calcário Estremenho, situated in the center of Portugal.

Sample:

SAMN10231585 • SRS4251985 • All experiments • All runs

Organism: bacterium CAVE-383

Library:

Name: 383

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Runs: 1 run, 5.2M spots, 1.6G bases, 665.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR8442863	5,163,197	1.6G	665.6Mb	2019-01-31

ID:: 7086097

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