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SRX5104518: WGS of Acinetobacter baumannii
1 ILLUMINA (Illumina HiSeq 4000) run: 6.8M spots, 2.1G bases, 851.9Mb downloads

Design: Total genomic DNA was then extracted using UltraClean Microbial DNA Isolation Kit (Mo Bio Laboratories, Inc., Carlsbad, CA). Genomic DNA of three samples was sequenced on the Illumina Hiseq 4000 platform to obtain 150-bp paired-end reads.
Submitted by: National University of Singapore
Study: Acinetobacter baumannii and E. coli sequencing
show Abstracthide Abstract
A ceftazidime-resistant Acinetobacter baumannii was isolated from a hospital wastewater effluent in Singapore. The isolate then acted as donor and was subjected to filter mating experiment with E. coli SCC1 strain as recipient. The recipient, donor and transconjugate was then sequenced and both donor and transconjugate was found to harbour blaNDM-1 and aph(3')-VI gene, of which bla¬NDM-1 was responsible for the resistance against ceftazidime.
Sample:
SAMN10531494 • SRS4114259 • All experiments • All runs
Library:
Name: WPB103
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 6.8M spots, 2.1G bases, 851.9Mb
Run# of Spots# of BasesSizePublished
SRR82899146,829,2212.1G851.9Mb2018-12-14

ID:
6881732

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