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SRX4824496: Illumina Sequencing of VRNA_279 Metagenomic Paired-end Library
5 ILLUMINA (Illumina HiSeq 2500) runs: 17.1M spots, 4.3G bases, 1.9Gb downloads

Design: Illumina HiSeq2500 2x126 sequencing of VRNA_279 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample: library constructed from cDNA
SAMN10173443 • SRS3898193 • All experiments • All runs
Library:
Name: ASF3485_1_L15343881
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 5 runs, 17.1M spots, 4.3G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR79935702,357,184594M321.4Mb2018-10-12
SRR79935712,406,565606.5M279.5Mb2018-10-12
SRR79935722,419,088609.6M279Mb2018-10-12
SRR79935734,937,5001.2G516.8Mb2018-10-12
SRR79935744,958,9251.2G522.5Mb2018-10-12

ID:
6524575

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