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SRX4824487: Illumina Sequencing of VRNA_270 Metagenomic Paired-end Library
5 ILLUMINA (Illumina HiSeq 2500) runs: 6.1M spots, 1.5G bases, 678.8Mb downloads

Design: Illumina HiSeq2500 2x126 sequencing of VRNA_270 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample: library constructed from cDNA
SAMN10173430 • SRS3898184 • All experiments • All runs
Library:
Name: ASF3482_1_L15343975
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 5 runs, 6.1M spots, 1.5G bases, 678.8Mb
Run# of Spots# of BasesSizePublished
SRR79935341,029,961259.6M136.5Mb2018-10-12
SRR7993535890,810224.5M101.5Mb2018-10-12
SRR7993536892,125224.8M100.9Mb2018-10-12
SRR79935371,670,420420.9M170.2Mb2018-10-12
SRR79935381,653,398416.7M169.6Mb2018-10-12

ID:
6524566

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