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SRX4824206: Illumina Sequencing of VRNA_269 Metagenomic Paired-end Library
4 ILLUMINA (Illumina HiSeq 2500) runs: 8.5M spots, 2.1G bases, 831.6Mb downloads

Design: Illumina HiSeq2500 2x126 sequencing of VRNA_269 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample: library constructed from cDNA
SAMN10173428 • SRS3897926 • All experiments • All runs
Library:
Name: ASF3458_1_L15343955
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 4 runs, 8.5M spots, 2.1G bases, 831.6Mb
Run# of Spots# of BasesSizePublished
SRR79932501,835,013462.4M175.2Mb2018-10-12
SRR79932511,806,831455.3M170.1Mb2018-10-12
SRR79932522,439,230614.7M243.9Mb2018-10-12
SRR79932532,436,119613.9M242.3Mb2018-10-12

ID:
6524285

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