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SRX4823681: Illumina Sequencing of VRNA_054 Metagenomic Paired-end Library
4 ILLUMINA (Illumina HiSeq 2500) runs: 53.8M spots, 13.6G bases, 5.5Gb downloads

Design: Illumina HiSeq2500 2x126 sequencing of VRNA_054 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample: library constructed from cDNA
SAMN10173381 • SRS3897528 • All experiments • All runs
Library:
Name: ASF0881_1_L14170373
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 4 runs, 53.8M spots, 13.6G bases, 5.5Gb
Run# of Spots# of BasesSizePublished
SRR79926185,808,1641.5G591.8Mb2018-10-12
SRR79926195,774,2881.5G587.5Mb2018-10-12
SRR799262021,406,0935.4G2.1Gb2018-10-12
SRR799262120,812,3705.2G2.2Gb2018-10-12

ID:
6523760

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