U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX4548886: Illumina Sequencing of MET2029 Metagenomic Paired-end Library
2 ILLUMINA (Illumina HiSeq 2500) runs: 285,947 spots, 72.1M bases, 35.8Mb downloads

Design: Illumina HiSeq2500 2x126 sequencing of MET2029 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample:
SAMN09715383 • SRS3666149 • All experiments • All runs
Library:
Name: ASF0802_1_L14067737
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 2 runs, 285,947 spots, 72.1M bases, 35.8Mb
Run# of Spots# of BasesSizePublished
SRR7688709149,16237.6M18.8Mb2018-10-12
SRR7688710136,78534.5M17Mb2018-10-12

ID:
6155068

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...