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SRX4548744: Illumina Sequencing of MET1818 Metagenomic Paired-end Library
4 ILLUMINA (Illumina HiSeq 2500) runs: 7.2M spots, 1.8G bases, 741.7Mb downloads

Design: Illumina HiSeq2500 2x126 sequencing of MET1818 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample:
SAMN09715313 • SRS3666007 • All experiments • All runs
Library:
Name: APP0138_1_L13270590
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 4 runs, 7.2M spots, 1.8G bases, 741.7Mb
Run# of Spots# of BasesSizePublished
SRR76884621,793,516452M186.8Mb2018-10-12
SRR76884631,752,745441.7M174.7Mb2018-10-12
SRR76884641,758,809443.2M176.6Mb2018-10-12
SRR76884651,943,247489.7M203.6Mb2018-10-12

ID:
6154926

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