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SRX4548707: Illumina Sequencing of MET1793 Metagenomic Paired-end Library
4 ILLUMINA (Illumina HiSeq 2500) runs: 5.7M spots, 1.4G bases, 569.3Mb downloads

Design: Illumina HiSeq2500 2x126 sequencing of MET1793 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample:
SAMN09715249 • SRS3665970 • All experiments • All runs
Library:
Name: APP0135_1_L13270528
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 4 runs, 5.7M spots, 1.4G bases, 569.3Mb
Run# of Spots# of BasesSizePublished
SRR76883811,413,379356.2M144.2Mb2018-10-12
SRR76883821,361,586343.1M134Mb2018-10-12
SRR76883831,367,971344.7M135.4Mb2018-10-12
SRR76883841,523,417383.9M155.8Mb2018-10-12

ID:
6154889

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