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SRX4548308: Illumina Sequencing of MET1749 Metagenomic Paired-end Library
5 ILLUMINA (Illumina HiSeq 2500) runs: 17.8M spots, 4.5G bases, 1.9Gb downloads

Design: Illumina HiSeq2500 2x126 sequencing of MET1749 metagenomic paired-end dual index library
Submitted by: NIH Intramural Sequencing Center (NISC)
Study: The skin microbiome of DOCK8-deficient patients
show Abstracthide Abstract
Dedicator of cytokinesis 8 (DOCK8) deficiency is a rare autosomal recessive, combined immunodeficiency that features cutaneous viral-associated manifestations, including molluscum contagiosum, herpesvirus infections, and warts (HPV infections) along with atopic dermatitis. We present a comprehensive investigation of the skin microbiome of DOCK8-deficient patients, focusing on the skin virome. We utilized both reference-based and reference-free analyses to investigate the microbial (viral) 'dark matter' and discovered a large number of novel human papillomavirus genomes.
Sample:
SAMN09715290 • SRS3665571 • All experiments • All runs
Library:
Name: AND1720_1_L12016790
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera DNA Sample Preparation Kit
Spot descriptor:
forward127  reverse

Pipeline: show...hide...
StepPrev StepProgramVersion
1NILRTA1.18.64
Runs: 5 runs, 17.8M spots, 4.5G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR76879133,539,236891.9M389.1Mb2018-10-12
SRR76879143,740,976942.7M439.8Mb2018-10-12
SRR76879153,504,940883.2M387.3Mb2018-10-12
SRR76879163,502,643882.7M384Mb2018-10-12
SRR76879173,512,725885.2M384.2Mb2018-10-12

ID:
6154490

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