U.S. flag

An official website of the United States government


Send to:

Choose Destination

SRX4528662: DNA-Seq of Phytophthora fragariae isolate BC-23: Liquid grown mycelium
1 ILLUMINA (Illumina MiSeq) run: 9M spots, 5.4G bases, 3.7Gb downloads

Design: DNA extracted with Macherey-Nagel NuceloSin Plant II kit, fragmented to 550bp, concentrated with AmpureBeads if necessary, NEBNext end repair, LT Illumina adaptors used
Submitted by: NIAB-EMR Genetics, Genomics and Breeding (NIAB-EMR GGB)
Study: Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly
show Abstracthide Abstract
Investigating the genetic variation between isolates of two closely related pathogen species. By understanding the genetic controls of pathogenicity and variation in virulence phenotypes, the breeding of resistant varieties of the host crop plants can be aided. Comparisons between the two species can also be examined to understand the evolutionary history of these two pathogens and potentially shed light on the appearance of host specificity.
SAMN07449682 • SRS3646529 • All experiments • All runs
Name: BC-23_Illumina
Instrument: Illumina MiSeq
Strategy: WGS
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 9M spots, 5.4G bases, 3.7Gb
Run# of Spots# of BasesSizePublished


Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...